Not a concern. From ATO on logbook method (for business but same for employees)
"If you started to use your car for business-related purposes less than 12 weeks before the end of the income year, you can continue to keep a logbook into the next year so it covers the required 12 continuous weeks."
Logbook method | Australian Taxation Office
Only required to have a valid logbook for the period you are claiming car expenses, before preparing tax return. Logbook method explained below.
Expenses for a car you own or lease | Australian Taxation Office
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